How to Clean Kombucha Supplies

Brewing kombucha is a controlled growth of bacteria and yeast, meaning you need to keep your supplies clean to prevent bad germs from sneaking in! Here’s how to sterilize and clean your kombucha supplies.

Making kombucha, along with any fermentation, is a practice in controlling microorganisms. Balancing the good bacteria and yeast against the bad guys to prevent mold and create delicious kombucha!.

The kombucha naturally defends itself somewhat, with its acidic, low pH killing off many potential pathogens (especially with continuous brewing). But with clean equipment, delicious kombucha success is inevitable! Here’s how I sterilize and clean my kombucha supplies.

Supplies needed to sterilize kombucha

How to clean kombucha supplies

I follow two general steps when cleaning my kombucha gear:

  1. Rinse with distilled white vinegar: Highly acidic and perfect for killing off the bad bacteria that may be hiding out on your supplies. Simply swish it around your bottles and jugs, or pour it over your supplies (such as funnels or spoons). (Note: Do not use raw or apple cider vinegar, which may contain nematodes called vinegar eels!)
  2. Rinse with boiling hot water: What the vinegar doesn’t kill, the hot water will! Carefully pour hot water into bottles and jugs, or submerge smaller supplies in the water. Swish it around so that it touches every surface, then pour out. Let supplies cool before pouring in the kombucha.

With your newly sterilized supplies, it’s important to pay attention to what other materials might be touching your equipment and ensure that they’re also clean. For instance, rather than use hand towels use paper towels. Avoid using a dirty kitchen sponge, which is laden with bacteria, and opt for a brand new sponge or paper towels instead.

And don’t forget to wash your hands! Similar to above, rinse your hands with vinegar then with warm water before touching your supplies or SCOBY.

Finally, avoid using soap, especially antibacterial soap. Antibacterial soap is indiscriminate in the bacteria it kills, and will hurt not only the bad but also the good bacteria (and in turn, hurt your SCOBY).

Bottle brushes to clean kombucha bottles

Need a deep clean?

To remove crusted on debris (especially for the inside of 2nd fermentation bottles), it may be helpful to use bottle brushes.

Have a lot of bottles that need cleaning? Stand them upside down in your dishwasher on the bottom rack. Run the dishwasher without any other dishes and without soap on its hottest setting!

And that’s basically it! Keeping a clean fermentation station doesn’t require much work or upkeep, just a bit of thought into what is coming into contact with your supplies. Happy brewing!

Pouring hot water into bottle

10 thoughts on “How to Clean Kombucha Supplies”

  1. I wash my bottles in the dishwasher with other dishes. When dry I store them in a cabinet in my kitchen. The bottles may sit there for several weeks between uses. Do I need to sterilized them again before use?
    And I use a laundered tea towel for the top of the jar. I have heard that paper towels have chemicals. Which is right to use?

    • No need to sterilize if you cleaned them well. Perhaps just a quick rinse out with hot water before adding the kombucha! A clean tea towel works just as well as paper towels – I use both interchangeably.

  2. I found a large jar with a spigot at a thrift store. I washed it in the dishwasher. I made my batch of kombucha but it grew mould. I am wondering if it is just impossible to clean around that spigot and if I should just abandon it, but I am not even sure that was the problem. What is your opinion on jars with spigots?

    • The spigot should be fine as long as it is fermentation grade (i.e. stainless steel) and very clean. I would take the spigot apart and clean it with boiling water, then reassemble.

  3. Hi Sarah,

    I just threw my bottles into the dishwasher with other dishes and soap! Obviously I didn’t read this before hand :/ Can I just give them a quick rinse in hot water once they’re out and before I start my second fermentation?


Leave a Comment